Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6212

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14580 and 14581 are separated by 115 nucleotides mRNA_6212: 14580 - SMART-Domain with 2 conserved Trp (W) residues-SM00456,SUPERFAMILY--SSF51045, at 263,965 to 264,991 14580 mRNA_6213: 14581 - KOG2318 Uncharacterized conserved protein, at 265,107 to 268,005 14581

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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263,246 + +1.3
263,248 - +1.3
263,790 + +0.4
263,803 - -1.6
263,809 - -0.9
264,005 - +0.3
264,006 + -0.7
264,549 + 14580 mRNA_6212 0.57 -1.1
264,801 + 14580 mRNA_6212 0.81 -0.5
264,853 + 14580 mRNA_6212 0.86 -2.0
264,994 - +0.6
265,107 + +0.0
265,257 + -0.8

Or see this region's nucleotide sequence