Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6215

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14582 and 14583 are separated by 272 nucleotides14583 and 14584 are separated by 986 nucleotides mRNA_6214: 14582 - K11684 BDF1 bromodomain-containing factor 1, at 268,724 to 272,351 14582 mRNA_6215: 14583 - Hypothetical Protein, at 272,624 to 273,109 14583 mRNA_6216: 14584 - K03120 TBP, tbp transcription initiation factor TFIID TATA-box-binding protein, at 274,096 to 275,401 14584

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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272,476 - -0.2
272,479 + +3.6
272,479 + -0.2
272,486 - +0.9
272,486 + +2.6
272,489 - +2.8
272,492 + +1.6
272,508 - +1.2
272,531 + +1.0
272,565 - -0.8
272,565 - -0.9
272,567 - +0.0
272,571 + +2.0
272,574 + -0.4
272,591 + +1.1
272,598 - +0.8
272,670 - -1.2
272,713 - 14583 mRNA_6215 0.18 +1.2
272,730 + 14583 mRNA_6215 0.22 -0.7
272,733 + 14583 mRNA_6215 0.22 +0.1
272,741 + 14583 mRNA_6215 0.24 +1.9
272,998 - 14583 mRNA_6215 0.77 +0.5
273,159 - +0.3
273,296 + +1.2

Or see this region's nucleotide sequence