Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6220

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14588 and 14589 are separated by 225 nucleotides mRNA_6220: 14588 - Hypothetical Protein, at 282,563 to 283,196 14588 mRNA_6221: 14589 - HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097,SMART-Broad-Complex, Tramtrack and Bric a brac-SM00225,SUPERFAMILY--SSF54695, at 283,422 to 285,141 14589

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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281,707 - -0.9
282,284 - +0.2
282,448 + -0.2
282,450 - +1.2
282,455 - -1.1
282,457 + -0.1
282,459 - -0.4
282,503 - -0.7
282,812 + 14588 mRNA_6220 0.39 +0.3
283,116 - 14588 mRNA_6220 0.87 +0.6
284,113 - 14589 mRNA_6221 0.40 +0.8

Or see this region's nucleotide sequence