Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6230

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14597 and 14598 are separated by 830 nucleotides14598 and 14599 are separated by 329 nucleotides mRNA_6229: 14597 - K01895 ACSS, acs acetyl-CoA synthetase, at 302,429 to 305,318 14597 mRNA_6230: 14598 - K10688 UBE2W, UBC16 ubiquitin-conjugating enzyme E2 W, at 306,149 to 307,289 14598 mRNA_6231: 14599 - KOG2358 NifU-like domain-containing proteins, at 307,619 to 308,722 14599

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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305,252 + +3.7
305,256 + +1.4
305,261 - -0.0
305,392 - +0.4
305,396 - +2.3
305,396 + -0.0
305,400 - +0.6
305,400 - +1.1
305,415 + -0.6
305,417 - +0.0
305,421 - +0.2
305,424 - -0.5
305,431 - +1.2
305,434 - +1.4
305,435 - +0.4
305,435 - +0.7
305,438 + +0.8
305,439 - +1.3
305,440 - +0.3
305,443 + +1.4
305,444 + -1.9
305,453 - +0.1
305,453 + -0.2
305,454 - -0.2
305,454 + +0.5
305,454 - +0.6
305,455 + -0.4
305,455 - +1.8
305,467 - +1.5
305,468 + -2.0
305,472 - +2.2
305,473 - +0.0
305,474 + +0.1
305,474 + +1.2
305,474 + +0.1
305,476 - +0.3
305,488 + -1.2
305,491 + +1.4
305,491 - +0.9
305,502 - +1.2
305,528 - +0.7
305,531 - -0.2
305,531 + -1.1
305,531 - -0.6
305,536 + +0.3
305,536 - -0.7
305,545 + +1.4
305,548 + +0.1
305,554 - +1.8
305,558 - -0.6
305,568 + +1.3
305,578 + +0.1
305,588 + +0.4
305,600 - +0.6
305,603 + +0.2
305,609 - +1.2
305,615 + -1.2
305,628 - -0.4
305,630 - +0.5
305,638 + +0.7
305,703 + +0.2
305,738 - +1.1
305,748 + +1.0
305,765 - +0.1
305,786 - +0.6
305,863 - -1.9
305,880 + -1.8
305,883 - -1.3
305,891 + +0.0
305,902 - +0.9
305,906 - -0.1
305,907 - +1.4
305,909 + +0.3
305,916 - +0.2
305,917 + +0.6
305,924 - +0.6
305,924 - +0.7
305,934 + +0.3
305,985 - -0.8
305,997 - -1.4
306,016 - -1.6
306,049 + -0.8
306,053 + +0.8
306,151 + +0.5
306,152 + +1.0
306,177 - -0.4
306,328 + 14598 mRNA_6230 0.16 -1.3
306,873 - 14598 mRNA_6230 0.63 +1.1
306,875 + 14598 mRNA_6230 0.64 +0.3
306,883 + 14598 mRNA_6230 0.64 +0.2
306,884 + 14598 mRNA_6230 0.64 +0.4
307,019 - 14598 mRNA_6230 0.76 +0.5
307,289 - +0.4
307,427 - +1.5
307,443 - -0.3
307,444 + -0.1
307,454 + -0.6
307,576 - -0.6
307,576 - -0.5
307,589 + -0.2
307,594 - +0.2
307,600 + +0.4
307,605 - +0.1

Or see this region's nucleotide sequence