Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6242

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14609 and 14610 are separated by 647 nucleotides14610 and 14611 are separated by 385 nucleotides mRNA_6241: 14609 - Hypothetical Protein, at 333,735 to 334,704 14609 mRNA_6242: 14610 - K00826 E2.6.1.42, ilvE branched-chain amino acid aminotransferase, at 335,352 to 337,546 14610 mRNA_6243: 14611 - Hypothetical Protein, at 337,932 to 340,072 14611

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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334,402 + 14609 mRNA_6241 0.69 -0.8
334,534 - 14609 mRNA_6241 0.82 +1.3
334,682 + -1.6
334,682 - -1.0
334,705 + +0.4
334,938 + +0.1
335,105 - +0.2
335,214 + -0.2
335,268 - -1.2
335,289 - -1.3
335,292 + -0.0
335,384 + -1.2
335,432 - +0.5
335,433 + -0.9
335,494 + +0.4
335,574 - 14610 mRNA_6242 0.10 -0.7
335,597 + 14610 mRNA_6242 0.11 -2.4
335,741 + 14610 mRNA_6242 0.18 -1.4
335,753 + 14610 mRNA_6242 0.18 -1.8
336,063 - 14610 mRNA_6242 0.32 -3.1
336,189 + 14610 mRNA_6242 0.38 -2.2
336,663 + 14610 mRNA_6242 0.60 +0.4
336,764 - 14610 mRNA_6242 0.64 -2.8
336,776 + 14610 mRNA_6242 0.65 -0.9
337,073 + 14610 mRNA_6242 0.78 -1.1
337,340 + -1.1
337,646 + -2.3
337,784 - -0.5
338,228 + 14611 mRNA_6243 0.14 +0.8
338,399 + 14611 mRNA_6243 0.22 -0.6

Or see this region's nucleotide sequence