Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6248

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14615 and 14616 are separated by 204 nucleotides14616 and 14617 are separated by 381 nucleotides mRNA_6247: 14615 - K01551 arsA, ASNA1 arsenite-transporting ATPase, at 348,270 to 350,050 14615 mRNA_6248: 14616 - Interpro GET complex subunit GET2 0, at 350,255 to 351,472 14616 mRNA_6249: 14617 - K01052 LIPA lysosomal acid lipase/cholesteryl ester hydrolase, at 351,854 to 354,817 14617

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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349,633 + 14615 mRNA_6247 0.77 -0.0
350,047 - -1.0
350,210 - -0.3
350,351 - -0.1
350,351 + -2.2
351,491 - +1.0
351,651 + +1.1
351,659 - -0.4
351,661 - -2.0
351,666 - +0.0
351,677 + -0.2
351,722 + +0.2
351,741 - +0.7
351,771 - -1.2
351,771 - +0.4
351,772 - +0.2
351,772 + +0.2
351,780 - +1.0
351,780 + -0.4
351,792 - +0.1
351,797 - +0.2
351,798 + -0.1
351,801 - +0.0
351,801 - -0.4
351,803 + -0.6
351,955 - -0.6
351,968 - +1.2
351,977 - -0.5
351,979 - -1.2
351,986 - +3.0
351,996 + -2.3
352,122 - -2.0
352,124 + +0.0
352,311 + 14617 mRNA_6249 0.15 +1.4
352,395 + 14617 mRNA_6249 0.18 -0.9

Or see this region's nucleotide sequence