Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6302

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14669 and 14670 are separated by 412 nucleotides14670 and 14671 are separated by 257 nucleotides mRNA_6301: 14669 - Hypothetical Protein, at 477,097 to 477,785 14669 mRNA_6302: 14670 - K12562 AMPH amphiphysin, at 478,198 to 480,170 14670 mRNA_6303: 14671 - HMMPfam-Uncharacterised protein family UPF0052-PF01933,SUPERFAMILY--SSF142338, at 480,428 to 482,328 14671

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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477,325 - 14669 mRNA_6301 0.33 +0.2
477,600 - 14669 mRNA_6301 0.73 +0.2
477,734 - -1.0
477,862 + -0.2
477,879 - -0.1
477,898 + +0.2
478,470 - 14670 mRNA_6302 0.14 +0.3
478,887 + 14670 mRNA_6302 0.35 -2.6
479,191 + 14670 mRNA_6302 0.50 +0.4
479,496 + 14670 mRNA_6302 0.66 +0.6
479,514 + 14670 mRNA_6302 0.67 -0.2
479,626 - 14670 mRNA_6302 0.72 -0.4
480,069 - +1.5
480,071 - +0.3
480,210 + +0.6
480,230 - +0.3
480,249 + +0.0
480,255 + -0.3
480,395 + +0.7
480,676 - 14671 mRNA_6303 0.13 +1.3
480,676 - 14671 mRNA_6303 0.13 -0.2
480,682 + 14671 mRNA_6303 0.13 +0.0
480,691 - 14671 mRNA_6303 0.14 +0.2
480,787 - 14671 mRNA_6303 0.19 +0.6

Or see this region's nucleotide sequence