Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6305

Experiment: YNB Ricinoleic Acid

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_6305: 14673 - HMMPfam-FAM72 protein-PF14976,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028, at 485,457 to 486,370 14673

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
remove
484,457 + +0.4
484,489 - +0.5
484,504 - +1.0
484,505 + -0.2
484,520 + +0.6
484,523 + +0.0
484,629 - +0.5
484,650 - +0.9
484,660 + -2.8
484,660 - +0.8
484,666 - -1.3
484,673 - +1.6
484,711 + +0.4
484,724 + -0.3
484,756 + -0.6
484,758 + +1.0
484,758 + +0.2
484,773 - -0.5
484,773 - -1.8
484,774 + -0.1
484,781 + -0.3
484,792 - +0.8
484,793 - +0.0
484,868 + +0.1
484,882 + -0.0
485,372 - -1.2
485,931 - 14673 mRNA_6305 0.52 +1.0
486,122 + 14673 mRNA_6305 0.73 +0.8
486,333 - -0.4
486,381 + -0.1
486,423 - +1.6
486,426 - +1.0
486,564 - +0.4
486,641 + +1.1
486,657 - +0.1
486,779 - -1.2
486,782 - -0.5
486,812 + +0.4
486,957 + -0.6
486,962 - +1.1
486,963 + -0.2
486,980 - +3.7
486,981 + +1.5
487,111 + +0.2
487,247 - -0.6

Or see this region's nucleotide sequence