Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6315

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14682 and 14683 are separated by 549 nucleotides14683 and 14684 are separated by 243 nucleotides mRNA_6314: 14682 - K11426 SMYD SET and MYND domain-containing protein, at 525,320 to 527,665 14682 mRNA_6315: 14683 - K10609 CUL4 cullin 4, at 528,215 to 531,333 14683 mRNA_6316: 14684 - Hypothetical Protein, at 531,577 to 532,542 14684

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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527,356 - 14682 mRNA_6314 0.87 -0.6
527,625 + -1.8
527,897 + -0.5
527,902 + +0.3
527,902 - -0.6
527,930 + +0.1
527,943 - -1.7
528,014 + +0.9
528,048 - +0.0
528,227 + -1.0
528,862 + 14683 mRNA_6315 0.21 -2.4
529,826 - 14683 mRNA_6315 0.52 -1.2
530,288 - 14683 mRNA_6315 0.66 -1.7
530,411 + 14683 mRNA_6315 0.70 -0.6
530,730 - 14683 mRNA_6315 0.81 -3.5
530,884 + 14683 mRNA_6315 0.86 +0.3
531,001 - 14683 mRNA_6315 0.89 -0.4
531,177 + -0.3
531,297 - -0.6
531,300 + -0.2
531,315 + +2.4
531,465 + +0.0
531,465 + -1.5
531,466 + -1.0
531,466 + +0.4
531,474 + +0.3
531,482 + +0.4
531,483 - +0.0
531,495 - +0.5
531,637 + -0.1
531,654 + -0.2
531,655 - -0.3
531,775 - 14684 mRNA_6316 0.20 +0.5
531,804 - 14684 mRNA_6316 0.23 -0.9
531,811 + 14684 mRNA_6316 0.24 -2.2
531,819 + 14684 mRNA_6316 0.25 -1.3
531,943 - 14684 mRNA_6316 0.38 +0.8
531,949 - 14684 mRNA_6316 0.39 +0.5
531,965 + 14684 mRNA_6316 0.40 +2.5
531,979 + 14684 mRNA_6316 0.42 -0.4
531,985 + 14684 mRNA_6316 0.42 -0.9
531,986 + 14684 mRNA_6316 0.42 +0.8
532,074 + 14684 mRNA_6316 0.51 -0.7
532,091 + 14684 mRNA_6316 0.53 +1.2
532,101 + 14684 mRNA_6316 0.54 -0.8
532,104 - 14684 mRNA_6316 0.55 +0.3
532,105 - 14684 mRNA_6316 0.55 +0.9
532,108 - 14684 mRNA_6316 0.55 -2.0
532,109 + 14684 mRNA_6316 0.55 -0.4
532,121 + 14684 mRNA_6316 0.56 +2.0
532,126 - 14684 mRNA_6316 0.57 +0.0
532,129 + 14684 mRNA_6316 0.57 -1.2
532,172 + 14684 mRNA_6316 0.62 -2.0
532,240 - 14684 mRNA_6316 0.69 +1.2
532,251 - 14684 mRNA_6316 0.70 +0.2
532,251 - 14684 mRNA_6316 0.70 +0.9
532,288 + 14684 mRNA_6316 0.74 +1.3

Or see this region's nucleotide sequence