Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6332

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14699 and 14700 are separated by 268 nucleotides14700 and 14701 are separated by 534 nucleotides mRNA_6331: 14699 - Hypothetical Protein, at 562,963 to 566,521 14699 mRNA_6332: 14700 - KOG0725 Reductases with broad range of substrate specificities, at 566,790 to 568,565 14700 mRNA_6333: 14701 - K08852 ERN1 serine/threonine-protein kinase/endoribonuclease IRE1, at 569,100 to 573,400 14701

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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565,866 + 14699 mRNA_6331 0.82 -3.3
565,910 + 14699 mRNA_6331 0.83 -0.2
566,026 + 14699 mRNA_6331 0.86 +0.1
566,041 - 14699 mRNA_6331 0.86 -0.2
566,041 - 14699 mRNA_6331 0.86 +0.4
566,452 - +1.1
566,515 - -0.5
566,521 + -2.0
566,530 + +0.1
566,541 + +0.6
566,626 - -0.4
566,654 - +0.9
566,657 + -1.1
566,658 - -0.6
566,749 - -0.2
566,816 - +1.0
566,901 + +0.9
566,929 + -0.2
567,109 + 14700 mRNA_6332 0.18 +0.2
567,228 - 14700 mRNA_6332 0.25 -0.3
567,745 - 14700 mRNA_6332 0.54 +0.1
568,025 + 14700 mRNA_6332 0.70 -0.9
568,213 - 14700 mRNA_6332 0.80 -1.4
568,343 - 14700 mRNA_6332 0.87 +0.3
568,481 + -0.0
568,621 - -0.7
568,628 + +0.9
568,629 + -0.3
568,642 - -0.6
568,648 + +0.0
568,768 - +2.0
568,799 - +1.2
568,802 - -1.9
568,816 + +0.2
568,817 + +0.3
568,819 - -0.3
568,837 + -1.0
568,876 + +0.2

Or see this region's nucleotide sequence