Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6336

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14703 and 14704 are separated by 336 nucleotides14704 and 14705 are separated by 265 nucleotides mRNA_6335: 14703 - BLAST chloride channel protein 3 [Pseudozyma hubeiensis..., at 576,114 to 577,521 14703 mRNA_6336: 14704 - K14773 UTP23 U3 small nucleolar RNA-associated protein 23, at 577,858 to 579,187 14704 mRNA_6337: 14705 - Hypothetical Protein, at 579,453 to 580,646 14705

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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576,889 - 14703 mRNA_6335 0.55 -0.6
576,909 - 14703 mRNA_6335 0.56 -0.2
576,915 + 14703 mRNA_6335 0.57 -0.8
577,141 - 14703 mRNA_6335 0.73 -1.7
577,458 - -1.0
577,466 + -0.7
577,485 - -0.2
577,617 - -1.5
577,622 - -1.6
577,755 - +1.2
577,762 - +0.2
577,762 - -0.6
577,762 - -0.1
577,765 + -0.7
577,768 - +1.8
579,215 - +1.0
579,522 + +0.8
579,537 + +0.1
579,666 + 14705 mRNA_6337 0.18 +0.3
580,091 - 14705 mRNA_6337 0.53 -0.2

Or see this region's nucleotide sequence