Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6364

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14731 and 14732 overlap by 61 nucleotides14732 and 14733 are separated by 157 nucleotides mRNA_6363: 14731 - K14553 UTP18 U3 small nucleolar RNA-associated protein 18, at 641,098 to 643,745 14731 mRNA_6364: 14732 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 643,685 to 645,198 14732 mRNA_6365: 14733 - HMMPfam-Trypsin-like peptidase domain-PF13365,SUPERFAMILY--SSF50494, at 645,356 to 646,894 14733

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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643,426 + 14731 mRNA_6363 0.88 +0.1
643,428 + 14731 mRNA_6363 0.88 +0.1
643,448 - 14731 mRNA_6363 0.89 -0.7
644,012 - 14732 mRNA_6364 0.22 +2.5
644,412 - 14732 mRNA_6364 0.48 +0.6
644,571 - 14732 mRNA_6364 0.59 +0.9
644,871 + 14732 mRNA_6364 0.78 -1.3
645,179 + +1.1
645,181 + -0.8
645,298 - +0.1
645,310 - +2.1
645,313 + -0.5
645,313 + +0.4
645,336 - +3.1
645,340 + -0.0
645,477 + -1.2
645,484 - -0.5
645,509 + +0.2
645,636 + 14733 mRNA_6365 0.18 +2.1
645,785 + 14733 mRNA_6365 0.28 +2.3
645,793 - 14733 mRNA_6365 0.28 +0.4
645,930 - 14733 mRNA_6365 0.37 -0.6
646,092 + 14733 mRNA_6365 0.48 +0.9

Or see this region's nucleotide sequence