Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6379

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14746 and 14747 are separated by 780 nucleotides14747 and 14748 are separated by 474 nucleotides mRNA_6378: 14746 - K11884 PNO1, DIM2 RNA-binding protein PNO1, at 675,035 to 675,906 14746 mRNA_6379: 14747 - Hypothetical Protein, at 676,687 to 677,946 14747 mRNA_6380: 14748 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 678,421 to 679,401 14748

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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676,331 + +1.6
676,426 - +0.4
676,436 - -0.3
676,438 - +0.8
676,439 + -0.3
676,443 + +0.2
676,455 + -1.5
676,457 - +0.3
676,463 + -0.3
676,496 - -2.0
676,516 + +0.4
676,596 - +0.3
676,876 - 14747 mRNA_6379 0.15 +1.4
676,915 + 14747 mRNA_6379 0.18 +0.4
677,335 - 14747 mRNA_6379 0.51 -0.8
677,351 + 14747 mRNA_6379 0.53 +0.9
677,766 - 14747 mRNA_6379 0.86 +1.0
677,780 - 14747 mRNA_6379 0.87 +1.0
677,804 + 14747 mRNA_6379 0.89 -1.1
678,013 + -1.2
678,344 - +0.2
678,345 + -0.3
678,517 - -0.1
678,534 - 14748 mRNA_6380 0.12 -0.1
678,638 - 14748 mRNA_6380 0.22 +2.2
678,649 - 14748 mRNA_6380 0.23 +0.3
678,675 - 14748 mRNA_6380 0.26 -1.3

Or see this region's nucleotide sequence