Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6401

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14769 and 14770 are separated by 260 nucleotides14770 and 14771 are separated by 57 nucleotides mRNA_6401: 14769 - HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112, at 730,509 to 731,692 14769 mRNA_6402: 14770 - Hypothetical Protein, at 731,953 to 732,304 14770 mRNA_6403: 14771 - HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112, at 732,362 to 733,777 14771

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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729,643 + +0.1
729,674 + +0.2
730,251 + -2.1
730,264 + +0.2
730,576 - -0.0
731,126 + 14769 mRNA_6401 0.52 +0.1
731,249 - 14769 mRNA_6401 0.62 -0.2
731,694 + -0.1
731,738 + +0.9
731,850 + +1.0
731,979 - +0.7
732,016 - 14770 mRNA_6402 0.18 -1.3
732,131 - 14770 mRNA_6402 0.51 -1.8
732,287 - +1.1
732,301 + +1.6
732,326 + -1.1
732,452 + +0.4
732,482 - +1.3
732,579 - 14771 mRNA_6403 0.15 +0.8

Or see this region's nucleotide sequence