Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6434

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14801 and 14802 are separated by 197 nucleotides14802 and 14803 are separated by 232 nucleotides mRNA_6433: 14801 - K12180 COPS7, CSN7 COP9 signalosome complex subunit 7, at 789,986 to 791,469 14801 mRNA_6434: 14802 - K01904 4CL 4-coumarate--CoA ligase, at 791,667 to 793,929 14802 mRNA_6435: 14803 - K01930 FPGS folylpolyglutamate synthase, at 794,162 to 796,213 14803

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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790,856 + 14801 mRNA_6433 0.59 -0.7
791,104 - 14801 mRNA_6433 0.75 -1.1
791,109 + 14801 mRNA_6433 0.76 -0.7
791,113 - 14801 mRNA_6433 0.76 -0.4
791,399 + +1.9
791,425 + +2.0
791,592 + +0.9
791,603 - -0.1
791,610 - +1.4
791,611 + -0.8
791,617 + +0.0
791,627 + -1.3
791,630 - +0.3
791,757 + +1.0
791,759 - +0.3
791,883 + +0.4
791,901 + 14802 mRNA_6434 0.10 -0.2
792,046 - 14802 mRNA_6434 0.17 -0.1
792,152 + 14802 mRNA_6434 0.21 -0.9
792,186 - 14802 mRNA_6434 0.23 +0.1
792,334 + 14802 mRNA_6434 0.29 +0.6
792,355 - 14802 mRNA_6434 0.30 -0.5
792,362 + 14802 mRNA_6434 0.31 +2.6
792,477 + 14802 mRNA_6434 0.36 +0.1
792,644 - 14802 mRNA_6434 0.43 +0.4
792,772 + 14802 mRNA_6434 0.49 -0.6
792,878 - 14802 mRNA_6434 0.54 +0.1
793,099 + 14802 mRNA_6434 0.63 -0.4
793,231 - 14802 mRNA_6434 0.69 +0.8
793,595 - 14802 mRNA_6434 0.85 -0.0
793,947 - -0.2
794,023 + +2.0
794,075 - +0.1

Or see this region's nucleotide sequence