Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6466

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14833 and 14834 are separated by 689 nucleotides14834 and 14835 are separated by 294 nucleotides mRNA_6465: 14833 - Hypothetical Protein, at 847,070 to 847,704 14833 mRNA_6466: 14834 - Hypothetical Protein, at 848,394 to 849,782 14834 mRNA_6467: 14835 - K20242 EVI5 ecotropic viral integration site 5 protein, at 850,077 to 853,413 14835

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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847,494 + 14833 mRNA_6465 0.67 +0.1
847,494 - 14833 mRNA_6465 0.67 +0.7
847,530 + 14833 mRNA_6465 0.72 -0.3
847,575 + 14833 mRNA_6465 0.80 +0.1
847,634 + 14833 mRNA_6465 0.89 -0.7
847,820 + +2.2
847,867 - +1.1
847,980 + -2.1
847,993 - -0.6
848,084 + +0.3
848,110 - +1.4
848,135 + +0.5
848,136 - -0.3
848,144 + -4.1
848,271 - +0.2
848,388 - +2.9
848,416 + +0.1
848,430 + -1.6
848,556 - 14834 mRNA_6466 0.12 +0.8
848,559 - 14834 mRNA_6466 0.12 +2.5
848,650 - 14834 mRNA_6466 0.18 +1.0
848,674 - 14834 mRNA_6466 0.20 -1.8
848,834 - 14834 mRNA_6466 0.32 +0.5
848,871 - 14834 mRNA_6466 0.34 +0.3
848,874 + 14834 mRNA_6466 0.35 +0.2
849,270 - 14834 mRNA_6466 0.63 -0.3
849,282 - 14834 mRNA_6466 0.64 +0.3
849,283 + 14834 mRNA_6466 0.64 +0.6
849,424 + 14834 mRNA_6466 0.74 +0.1
849,550 - 14834 mRNA_6466 0.83 -1.3
849,555 - 14834 mRNA_6466 0.84 -0.6
849,687 + -0.4
849,694 - -0.0
849,715 + -1.1
849,723 + -1.0
849,832 - +2.4
849,860 - -0.1
849,871 - -1.0
849,877 - +0.8
849,988 + -0.8
849,989 - -1.4
849,999 - +0.2
849,999 - -0.2
850,005 - +0.4
850,007 - +0.5
850,018 + +0.3
850,019 + -1.4
850,026 + +0.2
850,029 - +2.6
850,033 + +3.1
850,035 - -0.5
850,145 - -0.4
850,151 - -1.5
850,157 + -0.5
850,180 - +0.6
850,186 + -1.4
850,319 + -0.9
850,330 + +0.5
850,338 + +1.1
850,446 - 14835 mRNA_6467 0.11 +0.3
850,599 - 14835 mRNA_6467 0.16 -1.0
850,747 - 14835 mRNA_6467 0.20 +0.8

Or see this region's nucleotide sequence