Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6531

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14898 and 14899 are separated by 379 nucleotides14899 and 14900 are separated by 574 nucleotides mRNA_6530: 14898 - K03809 wrbA NAD(P)H dehydrogenase (quinone), at 1,010,809 to 1,011,597 14898 mRNA_6531: 14899 - K19940 SEC2 Rab guanine nucleotide exchange factor SEC2, at 1,011,977 to 1,014,833 14899 mRNA_6532: 14900 - K11352 NDUFA12 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 12, at 1,015,408 to 1,016,084 14900

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,011,044 + 14898 mRNA_6530 0.30 +1.7
1,011,180 - 14898 mRNA_6530 0.47 +1.0
1,011,331 + 14898 mRNA_6530 0.66 -0.8
1,011,370 + 14898 mRNA_6530 0.71 -0.6
1,011,624 - -0.2
1,011,625 + +0.1
1,011,635 - +1.5
1,011,636 + -0.3
1,011,638 + +2.3
1,011,648 + +0.7
1,011,656 + -0.1
1,011,771 - +2.3
1,011,825 - -1.4
1,012,076 - -0.4
1,012,078 - -0.6
1,012,081 - -0.1
1,012,092 + -0.2
1,012,094 - -0.1
1,012,095 + -0.6
1,012,101 + +0.5
1,012,111 - -0.1
1,012,111 - -0.9
1,012,117 + +0.8
1,012,123 - +0.4
1,012,126 + -0.8
1,012,131 + +1.2
1,012,131 + +0.5
1,012,146 - +0.6
1,012,147 - +0.1
1,012,157 - +1.0
1,012,227 + +0.1
1,012,265 - 14899 mRNA_6531 0.10 -0.2
1,012,268 + 14899 mRNA_6531 0.10 -2.5
1,012,406 - 14899 mRNA_6531 0.15 -1.6
1,012,530 - 14899 mRNA_6531 0.19 -1.4
1,012,534 - 14899 mRNA_6531 0.19 -0.7
1,012,689 + 14899 mRNA_6531 0.25 -1.0
1,012,999 - 14899 mRNA_6531 0.36 -1.3
1,013,106 - 14899 mRNA_6531 0.40 -2.4
1,013,139 - 14899 mRNA_6531 0.41 -0.5
1,013,157 + 14899 mRNA_6531 0.41 -0.4
1,013,263 - 14899 mRNA_6531 0.45 -1.1
1,013,465 - 14899 mRNA_6531 0.52 -1.3
1,013,893 - 14899 mRNA_6531 0.67 +1.4
1,013,901 + 14899 mRNA_6531 0.67 -0.8
1,014,194 + 14899 mRNA_6531 0.78 -1.9
1,014,441 + 14899 mRNA_6531 0.86 -0.5
1,014,591 - -1.0
1,014,743 + -1.9
1,014,750 - -1.1
1,014,887 - +1.4
1,014,894 - +0.1
1,014,904 - +0.3
1,014,905 + +0.6
1,015,042 - +0.1
1,015,043 - +1.7
1,015,045 + -0.2
1,015,066 - +1.8
1,015,072 + +0.1
1,015,087 - +0.4
1,015,097 - -0.1
1,015,197 + -1.6
1,015,214 - -1.3
1,015,344 + -1.7
1,015,494 - 14900 mRNA_6532 0.13 -2.5
1,015,516 + 14900 mRNA_6532 0.16 -0.1
1,015,649 - 14900 mRNA_6532 0.36 -1.3
1,015,660 + 14900 mRNA_6532 0.37 -0.8

Or see this region's nucleotide sequence