Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6561

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14928 and 14929 are separated by 187 nucleotides14929 and 14930 are separated by 160 nucleotides mRNA_6560: 14928 - Hypothetical Protein, at 1,095,420 to 1,097,567 14928 mRNA_6561: 14929 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 1,097,755 to 1,099,041 14929 mRNA_6562: 14930 - K20353 SEC16 COPII coat assembly protein SEC16, at 1,099,202 to 1,104,647 14930

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,097,863 - +0.5
1,097,989 - 14929 mRNA_6561 0.18 +0.3
1,097,995 + 14929 mRNA_6561 0.19 -0.3
1,097,999 - 14929 mRNA_6561 0.19 +1.2
1,098,136 + 14929 mRNA_6561 0.30 -1.1
1,098,279 + 14929 mRNA_6561 0.41 -0.2
1,098,289 - 14929 mRNA_6561 0.41 +1.1
1,098,318 + 14929 mRNA_6561 0.44 +1.3
1,098,322 + 14929 mRNA_6561 0.44 +0.0
1,098,455 - 14929 mRNA_6561 0.54 +0.0
1,098,603 - 14929 mRNA_6561 0.66 +2.0
1,098,608 + 14929 mRNA_6561 0.66 +0.2
1,099,150 + -2.6
1,099,167 - +0.6
1,099,250 + +2.0

Or see this region's nucleotide sequence