Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6607

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14974 and 14975 are separated by 348 nucleotides14975 and 14976 are separated by 176 nucleotides mRNA_6606: 14974 - KOG2761 START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer, at 1,216,222 to 1,217,950 14974 mRNA_6607: 14975 - K14572 MDN1, REA1 midasin, at 1,218,299 to 1,235,391 14975 mRNA_6608: 14976 - HMMPfam-Yqey-like protein-PF09424,SUPERFAMILY--SSF89095, at 1,235,568 to 1,236,163 14976

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,217,815 - -2.1
1,217,821 + -1.3
1,217,822 - +0.8
1,217,833 - -2.0
1,217,833 - +0.2
1,217,957 + -0.8
1,217,966 + -1.3
1,217,983 + -0.6
1,218,127 + +0.3
1,218,150 + +0.5
1,235,465 + +0.4
1,235,488 + -1.5
1,235,666 - 14976 mRNA_6608 0.16 -0.6
1,235,771 - 14976 mRNA_6608 0.34 -0.1
1,235,784 + 14976 mRNA_6608 0.36 -0.7
1,235,831 + 14976 mRNA_6608 0.44 +0.3
1,236,345 - +0.6

Or see this region's nucleotide sequence