Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6621

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14988 and 14989 are separated by 560 nucleotides14989 and 14990 are separated by 857 nucleotides mRNA_6620: 14988 - K02935 RP-L7, MRPL12, rplL large subunit ribosomal protein L7/L12, at 1,267,271 to 1,267,860 14988 mRNA_6621: 14989 - Hypothetical Protein, at 1,268,421 to 1,270,121 14989 mRNA_6622: 14990 - Hypothetical Protein, at 1,270,979 to 1,271,740 14990

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,268,196 - -1.5
1,268,209 + -1.8
1,268,216 - -1.0
1,268,249 - -1.8
1,268,385 - -0.3
1,268,498 - -0.2
1,268,513 + +1.2
1,268,997 - 14989 mRNA_6621 0.34 +0.6
1,269,147 + 14989 mRNA_6621 0.43 -1.4
1,269,158 - 14989 mRNA_6621 0.43 -6.0
1,269,424 + 14989 mRNA_6621 0.59 -0.2
1,269,431 + 14989 mRNA_6621 0.59 +0.5
1,269,802 - 14989 mRNA_6621 0.81 -1.1
1,269,811 + 14989 mRNA_6621 0.82 -0.8
1,269,829 - 14989 mRNA_6621 0.83 +0.2
1,270,023 - +0.3
1,270,233 - -1.1

Or see this region's nucleotide sequence