Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6631

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14998 and 14999 are separated by 987 nucleotides mRNA_6630: 14998 - KOG0463 GTP-binding protein GP-1, at 1,289,134 to 1,291,878 14998 mRNA_6631: 14999 - K11429 SUV420H histone-lysine N-methyltransferase SUV420H, at 1,292,866 to 1,293,273 14999

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,291,880 + -1.5
1,292,029 - -1.5
1,292,047 - +0.6
1,292,059 - +0.0
1,292,060 - -0.2
1,292,338 + -0.9
1,292,341 + -0.7
1,292,343 - +0.8
1,292,411 + -0.1
1,292,415 + +0.4
1,292,463 - -0.1
1,292,475 - -0.4
1,292,501 - -0.6
1,292,515 - +1.4
1,292,592 - +1.2
1,292,646 - -0.1
1,292,693 - -1.4
1,292,846 - +0.1
1,292,950 - 14999 mRNA_6631 0.21 -0.5
1,293,094 + 14999 mRNA_6631 0.56 +1.5
1,293,821 - -0.2

Or see this region's nucleotide sequence