Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6664

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15031 and 15032 are separated by 186 nucleotides mRNA_6663: 15031 - Hypothetical Protein, at 1,382,729 to 1,383,844 15031 mRNA_6664: 15032 - K03165 TOP3 DNA topoisomerase III, at 1,384,031 to 1,388,134 15032

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,383,482 - 15031 mRNA_6663 0.67 +1.5
1,383,497 + 15031 mRNA_6663 0.69 +1.3
1,383,924 - -1.4
1,384,034 + +0.3
1,384,179 + -1.5
1,384,334 - +0.9
1,384,357 - +1.4
1,384,808 - 15032 mRNA_6664 0.19 -0.4
1,385,439 + 15032 mRNA_6664 0.34 +0.5
1,388,500 - -0.3
1,388,522 + -0.4
1,388,647 + +1.0
1,388,796 + +0.0
1,388,797 + -1.1
1,388,922 - -1.5
1,388,943 + +0.0
1,388,952 - -1.5
1,388,955 + +0.5
1,389,084 + -0.3

Or see this region's nucleotide sequence