Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6714

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15081 and 15082 are separated by 929 nucleotides mRNA_6713: 15081 - HMMPfam-RTA1 like protein-PF04479, at 1,516,568 to 1,518,041 15081 mRNA_6714: 15082 - HMMPfam-Inhibitor of Apoptosis domain-PF00653,ProSiteProfiles-BIR repeat profile.-PS50143,SMART-Baculoviral inhibition of apoptosis protein repeat-SM00238,SUPERFAMILY--SSF57924, at 1,518,971 to 1,519,735 15082

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,518,182 - -0.2
1,518,331 + +0.1
1,518,332 - +0.1
1,518,379 - +2.0
1,518,455 + +1.8
1,518,505 + +0.4
1,518,508 - +1.0
1,518,508 - +0.1
1,518,508 - -0.4
1,518,509 + +0.6
1,518,519 - -1.1
1,518,631 - -0.5
1,518,634 - -0.9
1,518,638 - -1.0
1,518,651 + +1.1
1,518,662 + +1.9
1,518,664 - -0.2
1,518,675 + +0.7
1,518,684 - +0.5
1,518,685 + +1.5

Or see this region's nucleotide sequence