Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6745

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15112 and 15113 are separated by 107 nucleotides15113 and 15114 are separated by 117 nucleotides mRNA_6744: 15112 - KOG0813 Glyoxylase, at 46,801 to 48,312 15112 mRNA_6745: 15113 - HMMPfam-Uncharacterised conserved protein (DUF2315)-PF10231, at 48,420 to 49,672 15113 mRNA_6746: 15114 - KOG3381 Uncharacterized conserved protein, at 49,790 to 50,693 15114

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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47,690 + 15112 mRNA_6744 0.59 +0.0
47,696 + 15112 mRNA_6744 0.59 +0.3
47,696 + 15112 mRNA_6744 0.59 +0.2
47,961 - 15112 mRNA_6744 0.77 +0.6
47,962 - 15112 mRNA_6744 0.77 +0.3
48,087 + 15112 mRNA_6744 0.85 -0.2
48,268 - +1.6
48,279 - -0.3
48,404 + +0.9
48,417 + +1.2
48,561 - 15113 mRNA_6745 0.11 +0.2
48,562 + 15113 mRNA_6745 0.11 +0.1
48,576 + 15113 mRNA_6745 0.12 -0.2
48,762 + 15113 mRNA_6745 0.27 +2.6
49,686 - +0.3

Or see this region's nucleotide sequence