Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6796

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15163 and 15164 are separated by 780 nucleotides15164 and 15165 are separated by 237 nucleotides mRNA_6795: 15163 - KOG3548 DNA damage checkpoint protein RHP9/CRB2/53BP1, at 150,190 to 154,769 15163 mRNA_6796: 15164 - Hypothetical Protein, at 155,550 to 156,068 15164 mRNA_6797: 15165 - BLAST Formin-like protein 3 [Rhizoctonia solani], at 156,306 to 160,746 15165

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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154,586 + +0.0
154,713 - +0.6
154,732 + -0.4
154,914 + +0.3
155,147 + +0.4
155,166 + -0.7
155,186 + +0.1
155,298 + +2.4
155,324 - -0.5
155,337 + -1.2
155,446 + +0.5
155,462 - -0.7
155,481 + +2.4
155,498 + +2.0
155,626 - 15164 mRNA_6796 0.15 +1.0
155,632 - 15164 mRNA_6796 0.16 +1.9
155,646 - 15164 mRNA_6796 0.18 +2.7
155,651 + 15164 mRNA_6796 0.19 +1.1
155,708 - 15164 mRNA_6796 0.30 +0.3
155,754 - 15164 mRNA_6796 0.39 -0.9
155,771 - 15164 mRNA_6796 0.43 -0.5
155,773 + 15164 mRNA_6796 0.43 -0.4
155,774 - 15164 mRNA_6796 0.43 -0.2
155,778 - 15164 mRNA_6796 0.44 +0.4
155,784 + 15164 mRNA_6796 0.45 +0.6
155,795 + 15164 mRNA_6796 0.47 +0.0
155,795 + 15164 mRNA_6796 0.47 +1.4
155,799 + 15164 mRNA_6796 0.48 -2.2
155,809 + 15164 mRNA_6796 0.50 +0.7
155,811 + 15164 mRNA_6796 0.50 +2.3
155,822 - 15164 mRNA_6796 0.52 -0.1
155,916 - 15164 mRNA_6796 0.71 -2.6
155,938 - 15164 mRNA_6796 0.75 -0.4
155,943 - 15164 mRNA_6796 0.76 +0.0
155,953 - 15164 mRNA_6796 0.78 +0.2
155,963 + 15164 mRNA_6796 0.80 -3.1
156,099 - +0.4
156,108 + +1.1
156,117 - +0.1
156,410 + +1.5
156,498 - +0.2
156,519 - +1.4
156,679 - -1.1
156,679 - +0.8
156,918 + 15165 mRNA_6797 0.14 +0.3
156,919 - 15165 mRNA_6797 0.14 +0.5
156,921 + 15165 mRNA_6797 0.14 -0.9

Or see this region's nucleotide sequence