Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6802

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15169 and 15170 are separated by 286 nucleotides15170 and 15171 are separated by 91 nucleotides mRNA_6801: 15169 - K15279 SLC35C1, FUCT1 solute carrier family 35 (GDP-fucose transporter), member C1, at 168,460 to 170,274 15169 mRNA_6802: 15170 - Hypothetical Protein, at 170,561 to 172,312 15170 mRNA_6803: 15171 - KOG3131 Uncharacterized conserved protein, at 172,404 to 173,557 15171

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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169,661 + 15169 mRNA_6801 0.66 +2.4
169,662 - 15169 mRNA_6801 0.66 +3.4
169,965 - 15169 mRNA_6801 0.83 +2.8
170,115 - +1.1
170,278 - +0.1
170,279 - -0.2
170,356 - +1.6
170,383 - -1.9
170,388 + +0.8
170,402 - +0.3
170,407 - +1.0
170,410 + -0.1
170,438 - +0.5
170,444 - +1.6
170,444 + +0.3
170,445 - +1.7
170,445 + -1.2
170,446 - -0.6
170,447 + +0.1
170,449 + +0.6
170,453 + +0.6
170,453 + -0.1
170,454 + +0.1
170,460 - -1.0
170,460 + +0.3
170,470 - +0.1
170,479 + -1.3
170,489 + -0.2
170,591 - -2.3
170,603 + -0.3
170,607 - +0.6
170,612 - +1.4
170,618 + +0.2
170,635 + +2.3
170,646 + +0.2
170,655 + -0.7
170,765 - 15170 mRNA_6802 0.12 +1.3
170,778 - 15170 mRNA_6802 0.12 +0.1
170,783 + 15170 mRNA_6802 0.13 +1.0
170,806 - 15170 mRNA_6802 0.14 -2.6
170,810 + 15170 mRNA_6802 0.14 +0.3
170,961 - 15170 mRNA_6802 0.23 -0.7
171,223 + 15170 mRNA_6802 0.38 -0.0
171,373 + 15170 mRNA_6802 0.46 +2.0
171,545 - 15170 mRNA_6802 0.56 +0.5
171,576 + 15170 mRNA_6802 0.58 +0.3
171,661 - 15170 mRNA_6802 0.63 +0.6
171,825 + 15170 mRNA_6802 0.72 +0.6
172,104 + 15170 mRNA_6802 0.88 +1.4
172,105 - 15170 mRNA_6802 0.88 -0.2
172,311 + +0.1
172,316 - -1.1
172,426 - +1.3
172,450 + -1.5
172,495 - +2.0
172,567 + 15171 mRNA_6803 0.14 +0.9
172,859 + 15171 mRNA_6803 0.39 +0.7
172,870 - 15171 mRNA_6803 0.40 +1.1
173,001 + 15171 mRNA_6803 0.52 -0.3
173,129 + 15171 mRNA_6803 0.63 +1.6
173,163 + 15171 mRNA_6803 0.66 +0.7
173,273 - 15171 mRNA_6803 0.75 +1.7

Or see this region's nucleotide sequence