Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6808

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15175 and 15176 are separated by 586 nucleotides15176 and 15177 are separated by 367 nucleotides mRNA_6807: 15175 - HMMPfam-GRIP domain-PF01465,ProSiteProfiles-GRIP domain profile.-PS50913,SMART-golgin-97, RanBP2alpha,Imh1p and p230/golgin-245-SM00755, at 178,332 to 182,273 15175 mRNA_6808: 15176 - K12856 PRPF8, PRP8 pre-mRNA-processing factor 8, at 182,860 to 191,504 15176 mRNA_6809: 15177 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047,SUPERFAMILY--SSF81383, at 191,872 to 193,044 15177

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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182,204 - +1.4
182,215 - +1.8
182,362 + +0.3
182,362 + +0.2
182,365 - -0.6
182,383 - +1.1
182,404 - +0.1
182,501 - +0.5
182,515 - -0.3
182,522 - +0.0
182,526 + -2.5
182,526 - +0.2
182,527 + +1.2
182,532 + +0.3
182,542 + -0.5
182,548 + -2.0
182,548 + +0.1
182,548 + +0.8
182,550 + -1.8
182,678 - -0.3
182,680 - -0.3
182,682 - -0.5
182,818 - +0.6
182,838 - -0.2
184,832 + 15176 mRNA_6808 0.23 +0.8
186,906 + 15176 mRNA_6808 0.47 +0.6
188,886 + 15176 mRNA_6808 0.70 +1.2
188,995 + 15176 mRNA_6808 0.71 -0.5
191,654 - -1.4
191,681 - +1.1
191,682 + -0.4
191,830 + +2.5
191,937 + -0.5
192,099 + 15177 mRNA_6809 0.19 +0.1
192,107 - 15177 mRNA_6809 0.20 +0.7
192,296 + 15177 mRNA_6809 0.36 +0.9

Or see this region's nucleotide sequence