Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6829

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15196 and 15197 are separated by 516 nucleotides15197 and 15198 are separated by 149 nucleotides mRNA_6828: 15196 - K17338 REEP1_2_3_4 receptor expression-enhancing protein 1/2/3/4, at 223,853 to 225,358 15196 mRNA_6829: 15197 - HMMPfam-TAP42-like family-PF04177, at 225,875 to 227,277 15197 mRNA_6830: 15198 - K07893 RAB6A Ras-related protein Rab-6A, at 227,427 to 228,724 15198

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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224,981 + 15196 mRNA_6828 0.75 +1.2
225,112 - 15196 mRNA_6828 0.84 -2.8
225,130 + 15196 mRNA_6828 0.85 -1.7
225,142 - 15196 mRNA_6828 0.86 +1.9
225,449 - +0.0
225,455 + +0.4
225,461 + +0.2
225,568 + -2.1
225,585 - -1.3
225,592 + +0.2
225,597 + -0.1
225,730 - +2.3
225,896 + +1.5
225,901 - +0.6
227,362 + -0.1
227,366 - +1.0
227,366 + +0.0
227,519 + -0.1
227,817 + 15198 mRNA_6830 0.30 -0.3
227,849 + 15198 mRNA_6830 0.33 +0.1
227,853 - 15198 mRNA_6830 0.33 -2.5
227,950 + 15198 mRNA_6830 0.40 +1.0
227,960 + 15198 mRNA_6830 0.41 -2.0
228,127 - 15198 mRNA_6830 0.54 -0.8
228,237 - 15198 mRNA_6830 0.62 +1.0
228,250 - 15198 mRNA_6830 0.63 +0.4
228,272 + 15198 mRNA_6830 0.65 -1.2

Or see this region's nucleotide sequence