Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6836

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15204 and 15205 are separated by 496 nucleotides mRNA_6836: 15204 - Interpro Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family, at 237,797 to 238,899 15204 mRNA_6837: 15205 - HMMPfam-DUF2407 ubiquitin-like domain-PF10302,HMMPfam-DUF2407 C-terminal domain-PF13373, at 239,396 to 240,785 15205

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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236,811 - +0.3
236,813 + -0.4
236,817 - +1.2
236,818 + +0.2
236,823 - -0.7
236,824 - +0.8
236,825 - +0.8
236,829 - +0.8
236,831 + -0.7
236,836 - +1.0
236,836 - -0.1
236,836 - +1.8
236,840 + -0.0
236,840 + +0.9
236,858 - -0.1
236,991 + +0.4
237,010 + +2.2
237,025 - +2.3
237,027 - +0.6
237,055 - +0.1
237,064 - -0.4
237,109 + -2.5
237,145 - -0.2
237,145 - +0.5
237,154 + -0.4
237,159 + +2.6
237,262 + -1.7
237,266 + +0.2
237,274 + +1.0
237,274 + -0.3
237,278 + -0.6
237,292 + +0.0
237,299 - -0.3
237,325 - +0.8
237,333 - -0.3
237,361 + -2.3
237,366 + +0.5
237,377 + +0.7
237,378 + -1.6
237,378 + +0.1
237,384 + -0.0
237,415 - -0.2
237,428 + -0.6
237,475 + +0.1
237,519 - -1.1
237,519 - -0.6
237,521 - -0.1
237,526 + -1.5
237,531 + +0.0
237,533 - +0.8
237,533 - +0.3
237,541 + -1.8
237,541 + +2.4
237,541 + +1.2
237,541 + +0.8
237,545 - -0.8
237,557 - -1.6
237,563 + +0.0
237,571 - +0.6
237,571 - -0.3
237,817 - +0.4
237,868 + +1.3
238,080 + 15204 mRNA_6836 0.26 +0.8
238,426 - 15204 mRNA_6836 0.57 -0.4
238,477 + 15204 mRNA_6836 0.62 -0.5
238,528 - 15204 mRNA_6836 0.66 -1.2
238,821 - +0.5
238,848 - -1.0
238,855 + -0.2
238,857 + +1.8
238,859 + +0.4
238,866 + -1.3
238,993 - -2.8
239,016 - +0.6
239,025 - -1.4
239,027 + +0.2
239,040 - -0.1
239,057 - -0.6
239,058 + -1.2
239,060 + -0.1
239,073 + -0.6
239,158 + -2.1
239,159 - +1.3
239,185 - -0.1
239,201 + +0.6
239,218 - +0.4
239,275 - +1.3
239,293 - -0.1
239,323 + -0.6
239,470 - -2.6
239,622 - 15205 mRNA_6837 0.16 -0.7
239,624 - 15205 mRNA_6837 0.16 +0.9
239,630 + 15205 mRNA_6837 0.17 +0.9
239,770 + 15205 mRNA_6837 0.27 +0.3

Or see this region's nucleotide sequence