Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6837

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15204 and 15205 are separated by 496 nucleotides15205 and 15206 are separated by 155 nucleotides mRNA_6836: 15204 - Interpro Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family, at 237,797 to 238,899 15204 mRNA_6837: 15205 - HMMPfam-DUF2407 ubiquitin-like domain-PF10302,HMMPfam-DUF2407 C-terminal domain-PF13373, at 239,396 to 240,785 15205 mRNA_6838: 15206 - K17656 MSS51 mitochondrial splicing suppressor protein 51, at 240,941 to 242,492 15206

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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238,426 - 15204 mRNA_6836 0.57 -0.4
238,477 + 15204 mRNA_6836 0.62 -0.5
238,528 - 15204 mRNA_6836 0.66 -1.2
238,821 - +0.5
238,848 - -1.0
238,855 + -0.2
238,857 + +1.8
238,859 + +0.4
238,866 + -1.3
238,993 - -2.8
239,016 - +0.6
239,025 - -1.4
239,027 + +0.2
239,040 - -0.1
239,057 - -0.6
239,058 + -1.2
239,060 + -0.1
239,073 + -0.6
239,158 + -2.1
239,159 - +1.3
239,185 - -0.1
239,201 + +0.6
239,218 - +0.4
239,275 - +1.3
239,293 - -0.1
239,323 + -0.6
239,470 - -2.6
239,622 - 15205 mRNA_6837 0.16 -0.7
239,624 - 15205 mRNA_6837 0.16 +0.9
239,630 + 15205 mRNA_6837 0.17 +0.9
239,770 + 15205 mRNA_6837 0.27 +0.3
240,555 + 15205 mRNA_6837 0.83 -0.0
240,944 + -1.8
241,586 - 15206 mRNA_6838 0.42 -2.2

Or see this region's nucleotide sequence