Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6839

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15206 and 15207 are separated by 207 nucleotides15207 and 15208 are separated by 108 nucleotides mRNA_6838: 15206 - K17656 MSS51 mitochondrial splicing suppressor protein 51, at 240,941 to 242,492 15206 mRNA_6839: 15207 - K17257 ITFG1 integrin alpha FG-GAP repeat containing protein 1, at 242,700 to 245,129 15207 mRNA_6840: 15208 - SUPERFAMILY--SSF81383, at 245,238 to 247,225 15208

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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242,589 - -0.4
242,595 + -1.9
242,611 + -0.2
242,701 + +0.5
242,701 + +1.3
242,725 - -0.0
242,725 - +2.5
242,728 + -1.1
242,928 - +0.8
243,055 + 15207 mRNA_6839 0.15 +2.3
243,154 - 15207 mRNA_6839 0.19 +0.8
244,063 + 15207 mRNA_6839 0.56 -0.2
244,063 - 15207 mRNA_6839 0.56 -0.7
244,228 + 15207 mRNA_6839 0.63 -0.3
244,419 - 15207 mRNA_6839 0.71 +0.5
244,481 - 15207 mRNA_6839 0.73 -1.4
244,492 + 15207 mRNA_6839 0.74 +1.0
244,504 + 15207 mRNA_6839 0.74 +0.9
244,514 + 15207 mRNA_6839 0.75 +0.7
244,514 + 15207 mRNA_6839 0.75 +1.6
244,518 + 15207 mRNA_6839 0.75 +1.6
244,550 - 15207 mRNA_6839 0.76 +0.9
244,645 - 15207 mRNA_6839 0.80 -0.2
244,804 + 15207 mRNA_6839 0.87 +3.2
244,822 + 15207 mRNA_6839 0.87 +1.5
244,904 - -0.3
245,060 + +0.2
245,105 + +0.2
245,364 - -1.7
245,434 - +1.5
245,778 + 15208 mRNA_6840 0.27 +0.2
246,100 + 15208 mRNA_6840 0.43 +0.4

Or see this region's nucleotide sequence