Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6850

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15217 and 15218 are separated by 138 nucleotides15218 and 15219 are separated by 209 nucleotides mRNA_6849: 15217 - K14686 SLC31A1, CTR1 solute carrier family 31 (copper transporter), member 1, at 269,969 to 271,865 15217 mRNA_6850: 15218 - K05605 HIBCH 3-hydroxyisobutyryl-CoA hydrolase, at 272,004 to 274,065 15218 mRNA_6851: 15219 - Hypothetical Protein, at 274,275 to 275,000 15219

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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271,214 - 15217 mRNA_6849 0.66 -0.1
271,229 + 15217 mRNA_6849 0.66 -0.9
271,247 - 15217 mRNA_6849 0.67 +1.0
271,255 + 15217 mRNA_6849 0.68 +0.9
271,268 + 15217 mRNA_6849 0.68 +0.7
271,292 - 15217 mRNA_6849 0.70 -0.1
271,304 - 15217 mRNA_6849 0.70 -0.4
271,305 + 15217 mRNA_6849 0.70 +0.0
271,305 + 15217 mRNA_6849 0.70 -0.3
271,314 - 15217 mRNA_6849 0.71 +0.3
271,330 - 15217 mRNA_6849 0.72 -1.0
271,343 + 15217 mRNA_6849 0.72 -1.3
271,351 + 15217 mRNA_6849 0.73 +0.5
271,351 - 15217 mRNA_6849 0.73 +0.0
271,352 + 15217 mRNA_6849 0.73 -0.6
271,353 - 15217 mRNA_6849 0.73 +1.3
271,357 - 15217 mRNA_6849 0.73 +0.1
271,365 + 15217 mRNA_6849 0.74 -0.1
271,369 - 15217 mRNA_6849 0.74 +0.4
271,370 - 15217 mRNA_6849 0.74 -0.5
271,370 - 15217 mRNA_6849 0.74 -1.2
271,372 + 15217 mRNA_6849 0.74 +0.4
271,374 - 15217 mRNA_6849 0.74 -0.9
271,377 - 15217 mRNA_6849 0.74 +0.4
271,379 - 15217 mRNA_6849 0.74 +1.4
271,386 + 15217 mRNA_6849 0.75 +1.5
271,386 + 15217 mRNA_6849 0.75 +0.1
271,389 + 15217 mRNA_6849 0.75 +1.3
271,391 + 15217 mRNA_6849 0.75 +0.1
271,396 - 15217 mRNA_6849 0.75 -0.3
271,405 - 15217 mRNA_6849 0.76 -0.9
271,416 + 15217 mRNA_6849 0.76 +1.2
271,429 - 15217 mRNA_6849 0.77 +1.9
271,440 - 15217 mRNA_6849 0.78 +0.5
271,445 + 15217 mRNA_6849 0.78 +1.6
271,453 - 15217 mRNA_6849 0.78 +0.3
271,454 + 15217 mRNA_6849 0.78 -0.6
271,461 + 15217 mRNA_6849 0.79 -1.7
271,461 + 15217 mRNA_6849 0.79 -0.3
271,470 + 15217 mRNA_6849 0.79 -0.6
271,473 + 15217 mRNA_6849 0.79 +0.1
271,480 - 15217 mRNA_6849 0.80 -0.5
271,482 - 15217 mRNA_6849 0.80 +0.6
271,494 + 15217 mRNA_6849 0.80 +1.3
271,497 + 15217 mRNA_6849 0.81 +2.6
271,518 - 15217 mRNA_6849 0.82 +0.2
271,529 + 15217 mRNA_6849 0.82 -0.6
271,535 - 15217 mRNA_6849 0.83 -0.5
271,544 + 15217 mRNA_6849 0.83 +0.4
271,629 - 15217 mRNA_6849 0.88 -0.9
271,656 + 15217 mRNA_6849 0.89 -0.7
271,677 + -2.6
271,706 + +1.4
271,785 - -0.2
271,795 - +0.7
271,812 + -0.6
271,822 + -0.3
271,822 + +0.1
271,824 - -0.3
271,830 + -0.9
271,861 - +0.2
271,932 - -0.2
271,936 - +0.5
271,940 + -0.8
271,943 + +1.9
271,947 + -0.0
271,950 - -0.8
271,954 - -1.0
271,955 - +0.7
271,956 + +0.4
271,957 - +0.6
271,958 + -0.2
271,964 + -1.0
271,970 + -1.1
271,972 + -0.5
271,982 + -0.9
272,087 - -0.1
272,103 - -1.1
272,112 + +0.5
272,120 + +0.0
272,123 + -1.8
272,148 - -1.5
272,242 - 15218 mRNA_6850 0.12 -0.4
272,243 + 15218 mRNA_6850 0.12 -0.1
272,251 - 15218 mRNA_6850 0.12 +0.1
272,386 - 15218 mRNA_6850 0.19 +0.8
272,388 - 15218 mRNA_6850 0.19 +1.9
272,398 + 15218 mRNA_6850 0.19 +0.3
272,403 - 15218 mRNA_6850 0.19 +0.1
272,409 + 15218 mRNA_6850 0.20 +0.9
272,687 - 15218 mRNA_6850 0.33 -0.1
272,702 + 15218 mRNA_6850 0.34 -1.5
272,745 + 15218 mRNA_6850 0.36 -0.6
272,749 - 15218 mRNA_6850 0.36 -0.6
272,826 - 15218 mRNA_6850 0.40 -1.0
273,181 + 15218 mRNA_6850 0.57 +0.4
273,291 - 15218 mRNA_6850 0.62 +1.8
273,308 + 15218 mRNA_6850 0.63 +1.4
273,895 + +0.1
274,289 + -0.4
274,298 + -0.7
274,314 - -0.2
274,405 - 15219 mRNA_6851 0.18 -0.1
274,585 - 15219 mRNA_6851 0.43 -0.8
274,747 - 15219 mRNA_6851 0.65 +0.4
274,893 - 15219 mRNA_6851 0.85 -0.2

Or see this region's nucleotide sequence