Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6885

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15252 and 15253 are separated by 102 nucleotides mRNA_6884: 15252 - K00943 tmk, DTYMK dTMP kinase, at 350,438 to 351,511 15252 mRNA_6885: 15253 - KOG0565 Inositol polyphosphate 5-phosphatase and related proteins, at 351,614 to 354,932 15253

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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351,804 + -0.4
351,842 - -0.7
352,066 + 15253 mRNA_6885 0.14 +0.3
352,263 - 15253 mRNA_6885 0.20 -1.1
352,529 - 15253 mRNA_6885 0.28 +0.3
353,212 - 15253 mRNA_6885 0.48 -1.1
353,397 + 15253 mRNA_6885 0.54 +0.9
353,519 + 15253 mRNA_6885 0.57 -1.1
353,815 + 15253 mRNA_6885 0.66 +0.1
353,820 + 15253 mRNA_6885 0.66 -0.5
353,941 + 15253 mRNA_6885 0.70 -1.5
354,229 + 15253 mRNA_6885 0.79 -1.1
354,355 - 15253 mRNA_6885 0.83 +0.5
354,542 - 15253 mRNA_6885 0.88 -0.9
354,812 + -0.3
355,133 + -0.1
355,239 - -1.1
355,280 - +0.1
355,281 + +0.1
355,421 + +1.1
355,533 - +0.1
355,573 + +0.3
355,713 - +0.3
355,891 - +0.3
355,921 + -1.5

Or see this region's nucleotide sequence