Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6888

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15255 and 15256 are separated by 232 nucleotides15256 and 15257 are separated by 479 nucleotides mRNA_6887: 15255 - KOG2793 Putative N2,N2-dimethylguanosine tRNA methyltransferase, at 358,644 to 359,526 15255 mRNA_6888: 15256 - K04422 MAP3K13, LZK mitogen-activated protein kinase kinase kinase 13, at 359,759 to 363,523 15256 mRNA_6889: 15257 - K17065 DNM1L dynamin 1-like protein, at 364,003 to 366,716 15257

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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358,801 - 15255 mRNA_6887 0.18 -0.9
359,074 + 15255 mRNA_6887 0.49 +0.6
359,368 - 15255 mRNA_6887 0.82 -0.5
359,535 - +0.1
359,626 + -1.5
359,643 + -0.5
359,666 + +1.9
359,767 + -0.1
359,771 - -0.9
361,421 - 15256 mRNA_6888 0.44 -1.4
363,084 - 15256 mRNA_6888 0.88 -0.1
363,175 - +0.5
363,198 - -1.4
363,331 + -0.6
363,775 + +1.1
363,780 + +0.4
363,785 - +1.3
363,785 - -0.9
363,786 - -0.2
363,788 - +1.2
363,788 + +0.2
363,846 - -1.4
363,849 + -1.1
363,970 - +0.6

Or see this region's nucleotide sequence