Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6893

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15260 and 15261 are separated by 325 nucleotides mRNA_6892: 15260 - Hypothetical Protein, at 371,213 to 372,518 15260 mRNA_6893: 15261 - Hypothetical Protein, at 372,844 to 373,603 15261

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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371,846 + 15260 mRNA_6892 0.48 +0.0
372,315 - 15260 mRNA_6892 0.84 +1.5
372,440 + +1.8
372,626 - -0.6
372,650 - -1.1
372,746 - +0.1
372,889 + +1.1
373,046 - 15261 mRNA_6893 0.27 +0.4
373,243 + 15261 mRNA_6893 0.53 +0.7
373,383 + 15261 mRNA_6893 0.71 +0.7
373,526 + 15261 mRNA_6893 0.90 +0.4
373,981 - -0.7
374,391 + +1.7

Or see this region's nucleotide sequence