Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6914

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15281 and 15282 are separated by 715 nucleotides15282 and 15283 are separated by 559 nucleotides mRNA_6913: 15281 - Hypothetical Protein, at 419,561 to 420,635 15281 mRNA_6914: 15282 - KOG0254 Predicted transporter (major facilitator superfamily), at 421,351 to 423,576 15282 mRNA_6915: 15283 - K01130 E3.1.6.1, aslA arylsulfatase, at 424,136 to 426,200 15283

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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420,684 + -1.5
421,146 + +0.5
421,286 - -0.9
421,289 + +0.9
422,128 - 15282 mRNA_6914 0.35 +0.2
422,144 - 15282 mRNA_6914 0.36 +0.3
422,875 - 15282 mRNA_6914 0.68 +1.9
422,896 + 15282 mRNA_6914 0.69 +1.0
423,149 - 15282 mRNA_6914 0.81 -0.3
423,282 + 15282 mRNA_6914 0.87 -0.9
423,434 - -0.0
423,466 + -0.9
423,708 + +2.2
423,715 + -1.7
423,731 - +0.9
423,734 - +0.6
423,894 - +0.1
423,918 - +0.5
423,936 - -0.6
423,949 + +0.3
423,953 + +0.8
423,954 + -2.1
423,955 + +1.0
423,965 - +0.2
423,966 + -1.3
423,977 - -0.8
423,980 + +2.0
423,991 + -0.8
424,001 + -0.8
424,005 + -0.8
424,017 + -0.1
424,045 + +1.9
424,136 + -0.5
424,145 - +0.9
424,242 + +0.5
424,344 - 15283 mRNA_6915 0.10 -1.0
424,349 + 15283 mRNA_6915 0.10 -2.4

Or see this region's nucleotide sequence