Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6928

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15295 and 15296 are separated by 552 nucleotides mRNA_6927: 15295 - Hypothetical Protein, at 453,197 to 455,324 15295 mRNA_6928: 15296 - HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,SUPERFAMILY--SSF50685, at 455,877 to 456,215 15296

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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455,067 + 15295 mRNA_6927 0.88 -0.2
455,513 + +1.2
455,630 - -1.8
455,631 - +0.6
455,643 - -0.7
455,654 + -0.6
455,823 + +0.7
456,671 + -0.5
456,966 - +0.3
457,097 - +1.3
457,098 + +0.7
457,101 - -0.3
457,114 + -0.4

Or see this region's nucleotide sequence