Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6935

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15302 and 15303 are separated by 111 nucleotides15303 and 15304 are separated by 98 nucleotides mRNA_6934: 15302 - K12871 CCDC12 coiled-coil domain-containing protein 12, at 468,467 to 469,312 15302 mRNA_6935: 15303 - K12830 SF3B3, SAP130, RSE1 splicing factor 3B subunit 3, at 469,424 to 473,834 15303 mRNA_6936: 15304 - K09669 FUT10 alpha-1,3-fucosyltransferase 10, at 473,933 to 475,521 15304

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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468,454 - +0.4
468,591 - 15302 mRNA_6934 0.15 -0.6
469,209 + 15302 mRNA_6934 0.88 -1.1
469,307 - -0.4
469,334 - +0.9
469,349 + -0.1
469,366 - -1.1
473,930 + -1.3
474,091 - -0.3
474,230 - 15304 mRNA_6936 0.19 -0.2
474,715 + 15304 mRNA_6936 0.49 -0.7
474,731 + 15304 mRNA_6936 0.50 -0.7

Or see this region's nucleotide sequence