Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6959

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15326 and 15327 are separated by 309 nucleotides15327 and 15328 are separated by 546 nucleotides mRNA_6958: 15326 - K09238 ACE2 metallothionein expression activator, at 534,004 to 536,795 15326 mRNA_6959: 15327 - K14805 DDX24, MAK5 ATP-dependent RNA helicase DDX24/MAK5, at 537,105 to 540,222 15327 mRNA_6960: 15328 - K01469 OPLAH, OXP1, oplAH 5-oxoprolinase (ATP-hydrolysing), at 540,769 to 543,741 15328

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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536,485 - 15326 mRNA_6958 0.89 +2.6
536,644 - +1.8
540,312 + -1.5
540,339 + +0.2
540,437 - -0.1
540,441 - +0.5
540,446 + -0.2
540,449 - +0.8
540,452 + -0.7
540,469 - +0.2
540,476 + +0.5
540,591 + +0.2
540,600 + -0.0
540,612 - -0.5
540,628 + -0.1
540,738 - +0.4
540,758 - +0.1
540,774 + -0.4
540,778 + -1.2
540,891 - +0.8
540,920 - +0.1
541,039 + -1.3

Or see this region's nucleotide sequence