Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6973

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15340 and 15341 are separated by 172 nucleotides15341 and 15342 are separated by 136 nucleotides mRNA_6972: 15340 - K20279 SYNJ synaptojanin, at 568,176 to 572,419 15340 mRNA_6973: 15341 - K11303 HAT1, KAT1 histone acetyltransferase 1, at 572,592 to 574,305 15341 mRNA_6974: 15342 - K17686 copA, ATP7 Cu+-exporting ATPase, at 574,442 to 577,802 15342

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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571,753 - 15340 mRNA_6972 0.84 -0.9
571,950 - 15340 mRNA_6972 0.89 +2.1
572,365 - +0.3
572,516 - +1.8
572,645 - +1.3
572,672 + +0.5
572,678 + -0.2
572,791 + 15341 mRNA_6973 0.12 +1.5
573,705 - 15341 mRNA_6973 0.65 -0.6
574,136 + -0.7
574,478 + +0.7

Or see this region's nucleotide sequence