Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6979

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15346 and 15347 are separated by 576 nucleotides15347 and 15348 are separated by 356 nucleotides mRNA_6978: 15346 - KOG1014 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3, at 584,489 to 585,687 15346 mRNA_6979: 15347 - KOG2789 Putative Zn-finger protein, at 586,264 to 588,274 15347 mRNA_6980: 15348 - SUPERFAMILY--SSF51445, at 588,631 to 590,610 15348

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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585,415 - 15346 mRNA_6978 0.77 -0.4
585,450 - 15346 mRNA_6978 0.80 +2.0
585,726 - +0.2
585,861 - -1.8
585,874 - +0.2
585,880 + +0.4
585,888 - -1.5
585,890 + +1.6
585,913 + -0.3
585,916 + -0.1
585,917 + +0.3
585,932 + -0.5
586,034 + +0.1
586,054 - -0.3
586,054 + +0.4
586,066 + +3.0
586,188 - -2.3
586,198 + +1.4
586,199 - +0.7
586,204 - +0.2
586,213 + +1.9
586,218 - +0.1
586,224 - -1.4
586,228 + -2.0
586,230 - -1.7
586,353 - -0.7
586,355 - -0.6
586,361 - -1.0
586,364 + -0.4
586,377 + -0.4
586,378 + -0.6
586,382 + -0.5
586,655 + 15347 mRNA_6979 0.19 -0.3
586,672 + 15347 mRNA_6979 0.20 -0.5
586,800 + 15347 mRNA_6979 0.27 -1.1
586,822 - 15347 mRNA_6979 0.28 +1.5
586,945 + 15347 mRNA_6979 0.34 -1.7
586,950 - 15347 mRNA_6979 0.34 -3.0
587,112 - 15347 mRNA_6979 0.42 +0.1
587,121 + 15347 mRNA_6979 0.43 -3.6
587,208 + 15347 mRNA_6979 0.47 -0.4
587,345 - 15347 mRNA_6979 0.54 -0.6
587,397 - 15347 mRNA_6979 0.56 +0.4
587,725 + 15347 mRNA_6979 0.73 -0.5
587,815 + 15347 mRNA_6979 0.77 -0.2
587,979 + 15347 mRNA_6979 0.85 +1.5
587,984 - 15347 mRNA_6979 0.86 +0.7
588,227 - +1.3
588,266 - -0.5
588,272 + -0.7
588,392 - +1.9
588,569 + -0.3
588,581 - -0.5
588,585 + -0.9
588,586 - -0.5
588,694 - -0.1
588,730 - +0.5
588,752 - -1.9
589,042 + 15348 mRNA_6980 0.21 +0.0
589,193 - 15348 mRNA_6980 0.28 -2.9
589,197 + 15348 mRNA_6980 0.29 -2.0
589,254 + 15348 mRNA_6980 0.31 -0.4

Or see this region's nucleotide sequence