Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7028

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15395 and 15396 are separated by 310 nucleotides15396 and 15397 are separated by 256 nucleotides mRNA_7027: 15395 - K13025 EIF4A3, FAL1 ATP-dependent RNA helicase, at 705,203 to 707,269 15395 mRNA_7028: 15396 - SUPERFAMILY--SSF81383, at 707,580 to 708,539 15396 mRNA_7029: 15397 - Hypothetical Protein, at 708,796 to 709,745 15397

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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707,514 - +1.1
708,035 - 15396 mRNA_7028 0.47 +0.2
708,169 + 15396 mRNA_7028 0.61 +1.3
708,603 - +0.4
708,637 + +0.1
708,644 + +1.8
708,648 - +0.3
708,648 - -1.7
708,648 - +1.3
708,649 - +1.4
708,666 - +0.6
708,689 + -0.5
708,937 - 15397 mRNA_7029 0.15 +0.6
708,989 - 15397 mRNA_7029 0.20 -1.8
709,076 - 15397 mRNA_7029 0.29 -2.0
709,076 - 15397 mRNA_7029 0.29 +1.5
709,110 - 15397 mRNA_7029 0.33 -1.2
709,495 - 15397 mRNA_7029 0.74 +0.7

Or see this region's nucleotide sequence