Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7034

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15401 and 15402 are separated by 914 nucleotides15402 and 15403 are separated by 316 nucleotides mRNA_7033: 15401 - Hypothetical Protein, at 715,593 to 716,570 15401 mRNA_7034: 15402 - HMMPfam-UBA/TS-N domain-PF00627,HMMPfam-Uncharacterized conserved protein (DUF2196)-PF09962,ProSiteProfiles-Ubiquitin-associated domain (UBA) profile.-PS50030,SUPERFAMILY--SSF46934, at 717,485 to 718,005 15402 mRNA_7035: 15403 - K11826 AP2M1 AP-2 complex subunit mu-1, at 718,322 to 720,163 15403

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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716,762 + +0.3
717,187 + +0.2
717,188 - +0.7
717,205 - +1.1
717,319 - -0.3
717,327 + +0.8
717,339 + -0.2
717,486 + +1.5
717,602 - 15402 mRNA_7034 0.22 -0.3
717,615 + 15402 mRNA_7034 0.25 -0.1
717,617 - 15402 mRNA_7034 0.25 +0.5
717,765 - 15402 mRNA_7034 0.54 +0.4
717,767 - 15402 mRNA_7034 0.54 -0.6
718,081 + -0.0

Or see this region's nucleotide sequence