Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7047

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15414 and 15415 are separated by 388 nucleotides15415 and 15416 are separated by 378 nucleotides mRNA_7046: 15414 - K01341 KEX2 kexin, at 748,677 to 751,864 15414 mRNA_7047: 15415 - K07466 RFA1, RPA1, rpa replication factor A1, at 752,253 to 754,600 15415 mRNA_7048: 15416 - KOG2476 Uncharacterized conserved protein, at 754,979 to 757,509 15416

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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751,872 - -0.6
752,133 - +1.3
754,787 + -0.3
754,789 + -0.1
754,805 - +0.6
754,815 + +0.1
754,822 + +1.9
754,922 - -1.7
754,930 - +4.7
754,932 + +0.4
754,933 - -0.0
754,937 + -2.0
754,937 + +0.5
754,945 - +0.4
754,947 + +2.2
754,948 + -1.0
754,949 + -0.9
754,952 - +1.1
754,962 + +0.9
754,979 + +0.8
754,988 + -1.3
755,088 + +1.9
755,092 + +0.2
755,097 + -1.9
755,275 - 15416 mRNA_7048 0.12 +0.4
755,400 + 15416 mRNA_7048 0.17 +0.2
755,408 + 15416 mRNA_7048 0.17 -0.5

Or see this region's nucleotide sequence