Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7048

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15415 and 15416 are separated by 378 nucleotides mRNA_7047: 15415 - K07466 RFA1, RPA1, rpa replication factor A1, at 752,253 to 754,600 15415 mRNA_7048: 15416 - KOG2476 Uncharacterized conserved protein, at 754,979 to 757,509 15416

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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754,787 + -0.3
754,789 + -0.1
754,805 - +0.6
754,815 + +0.1
754,822 + +1.9
754,922 - -1.7
754,930 - +4.7
754,932 + +0.4
754,933 - -0.0
754,937 + -2.0
754,937 + +0.5
754,945 - +0.4
754,947 + +2.2
754,948 + -1.0
754,949 + -0.9
754,952 - +1.1
754,962 + +0.9
754,979 + +0.8
754,988 + -1.3
755,088 + +1.9
755,092 + +0.2
755,097 + -1.9
755,275 - 15416 mRNA_7048 0.12 +0.4
755,400 + 15416 mRNA_7048 0.17 +0.2
755,408 + 15416 mRNA_7048 0.17 -0.5
755,634 - 15416 mRNA_7048 0.26 -0.2
755,874 - 15416 mRNA_7048 0.35 -0.1
755,883 + 15416 mRNA_7048 0.36 +0.8
755,967 - 15416 mRNA_7048 0.39 +1.8
756,011 + 15416 mRNA_7048 0.41 +0.8
756,289 + 15416 mRNA_7048 0.52 +1.1
756,566 - 15416 mRNA_7048 0.63 -0.8
756,833 - 15416 mRNA_7048 0.73 +2.5
756,835 - 15416 mRNA_7048 0.73 +1.1
758,415 - +2.0
758,439 - -1.9

Or see this region's nucleotide sequence