Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7076

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15444 and 15445 are separated by 169 nucleotides mRNA_7076: 15444 - K17413 MRPS35 small subunit ribosomal protein S35, at 825,955 to 826,915 15444 mRNA_7077: 15445 - K18789 XGD1 xylogalacturonan beta-1,3-xylosyltransferase, at 827,085 to 831,280 15445

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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825,046 - -0.8
825,048 + -2.5
825,175 - -0.2
825,317 - -1.3
825,330 + +1.9
825,473 + +0.3
825,474 + +0.5
825,482 + -1.1
825,485 + -0.0
825,486 - +0.3
825,486 - -0.1
825,493 + -0.2
825,494 - +0.7
825,495 + +0.3
825,499 + +1.1
825,501 + -0.0
825,623 + +0.7
825,625 - -0.8
825,628 - +0.6
825,629 - +1.2
825,631 + +0.2
825,784 + -0.7
825,947 + -2.6
826,917 + -1.2
826,976 - -0.0
827,128 - +2.6
827,203 + +1.0
827,364 + +1.3
827,365 - +0.2
827,423 - +2.0
827,510 - 15445 mRNA_7077 0.10 +1.8
827,554 + 15445 mRNA_7077 0.11 +1.1
827,699 + 15445 mRNA_7077 0.15 -0.6

Or see this region's nucleotide sequence