Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7078

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15445 and 15446 are separated by 454 nucleotides15446 and 15447 are separated by 462 nucleotides mRNA_7077: 15445 - K18789 XGD1 xylogalacturonan beta-1,3-xylosyltransferase, at 827,085 to 831,280 15445 mRNA_7078: 15446 - Hypothetical Protein, at 831,735 to 832,558 15446 mRNA_7079: 15447 - Hypothetical Protein, at 833,021 to 833,925 15447

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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830,834 - 15445 mRNA_7077 0.89 +0.1
830,842 + 15445 mRNA_7077 0.90 +1.1
830,973 + +3.4
831,111 + +1.5
831,121 - +1.3
831,251 + +1.3
831,270 + -0.0
831,280 + +2.8
831,372 + +1.1
831,399 - -1.0
831,412 - +2.3
831,539 + -0.1
831,556 - +0.7
831,558 - +1.7
831,558 - +1.6
831,565 - +0.5
831,575 + -0.4
831,579 + -1.3
831,584 - -1.0
831,585 + +0.0
831,586 - +0.7
831,586 - +0.3
831,592 + +0.4
831,598 - +0.9
831,604 + -1.4
831,610 + -0.1
831,653 - +0.7
831,666 + -0.3
831,756 + -0.5
831,856 + 15446 mRNA_7078 0.15 -0.1
832,583 - +0.3
832,593 + +0.1
832,723 - -0.1
832,728 + +1.3
832,731 - +0.3
832,764 - +0.7
832,985 - +0.1
832,987 - -1.0
833,111 - +0.1
833,130 + 15447 mRNA_7079 0.12 +0.9
833,142 - 15447 mRNA_7079 0.13 +1.5
833,281 - 15447 mRNA_7079 0.29 -1.3
833,305 + 15447 mRNA_7079 0.31 +0.3
833,422 - 15447 mRNA_7079 0.44 +0.2
833,444 - 15447 mRNA_7079 0.47 -0.3
833,444 + 15447 mRNA_7079 0.47 -2.3

Or see this region's nucleotide sequence