Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7087

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15454 and 15455 are separated by 38 nucleotides15455 and 15456 are separated by 790 nucleotides mRNA_7086: 15454 - HMMPfam-Shugoshin C terminus-PF07557, at 847,556 to 851,531 15454 mRNA_7087: 15455 - Hypothetical Protein, at 851,570 to 853,119 15455 mRNA_7088: 15456 - K10739 RFA2, RPA2 replication factor A2, at 853,910 to 855,078 15456

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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850,666 - 15454 mRNA_7086 0.78 +0.3
850,729 + 15454 mRNA_7086 0.80 -0.3
850,861 - 15454 mRNA_7086 0.83 -0.7
850,885 - 15454 mRNA_7086 0.84 -1.2
851,294 + +0.9
851,451 + +0.1
851,604 + -0.7
851,906 - 15455 mRNA_7087 0.22 +1.0
851,913 + 15455 mRNA_7087 0.22 -0.5
852,514 + 15455 mRNA_7087 0.61 +1.5
852,514 + 15455 mRNA_7087 0.61 -3.6
853,184 - +1.7
853,808 + +2.0

Or see this region's nucleotide sequence