Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7100

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15467 and 15468 are separated by 375 nucleotides15468 and 15469 are separated by 97 nucleotides mRNA_7099: 15467 - K12845 SNU13, NHP2L U4/U6 small nuclear ribonucleoprotein SNU13, at 879,733 to 880,505 15467 mRNA_7100: 15468 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 880,881 to 881,621 15468 mRNA_7101: 15469 - K08968 E1.8.4.14 L-methionine (R)-S-oxide reductase, at 881,719 to 882,426 15469

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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880,836 - -1.2
880,847 + -0.5
880,996 + 15468 mRNA_7100 0.16 -0.0
881,007 - 15468 mRNA_7100 0.17 +0.5
881,149 - 15468 mRNA_7100 0.36 +1.1
881,365 + 15468 mRNA_7100 0.65 -3.0
881,383 + 15468 mRNA_7100 0.68 +0.9
881,594 - -0.0
881,597 + +0.6
881,731 + -0.4
881,870 - 15469 mRNA_7101 0.21 +0.1
881,876 - 15469 mRNA_7101 0.22 +1.3
881,882 - 15469 mRNA_7101 0.23 -1.1
881,896 + 15469 mRNA_7101 0.25 +0.3
882,017 + 15469 mRNA_7101 0.42 -2.0
882,027 - 15469 mRNA_7101 0.44 -0.4
882,053 - 15469 mRNA_7101 0.47 +1.1
882,114 - 15469 mRNA_7101 0.56 +0.4
882,177 - 15469 mRNA_7101 0.65 +0.8
882,187 - 15469 mRNA_7101 0.66 -0.1
882,189 + 15469 mRNA_7101 0.66 +0.7
882,191 + 15469 mRNA_7101 0.67 +0.8
882,192 - 15469 mRNA_7101 0.67 +0.5
882,192 - 15469 mRNA_7101 0.67 +3.2
882,209 + 15469 mRNA_7101 0.69 +0.5
882,213 - 15469 mRNA_7101 0.70 -4.4
882,219 + 15469 mRNA_7101 0.71 +0.4
882,236 + 15469 mRNA_7101 0.73 -1.1
882,380 - +1.4
882,464 - +0.1
882,465 + -0.3
882,472 - +0.5
882,475 - +2.9
882,477 - -3.1
882,485 - +0.1
882,486 - -1.0
882,585 + -0.8

Or see this region's nucleotide sequence