Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7136

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15503 and 15504 are separated by 236 nucleotides15504 and 15505 are separated by 184 nucleotides mRNA_7135: 15503 - K02948 RP-S11, MRPS11, rpsK small subunit ribosomal protein S11, at 960,089 to 960,921 15503 mRNA_7136: 15504 - K01880 GARS, glyS1 glycyl-tRNA synthetase, at 961,158 to 963,860 15504 mRNA_7137: 15505 - KOG1933 Cholesterol transport protein (Niemann-Pick C disease protein), at 964,045 to 968,474 15505

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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961,086 - -0.8
964,087 + +0.0
964,417 + -2.2
964,546 + 15505 mRNA_7137 0.11 -3.4

Or see this region's nucleotide sequence